1.8 Specimen information model to this guide - XML Representation

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: 1.8 Specimen information model to this guide - XML Representation

Draft as of 2024-04-18
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<ConceptMap xmlns="http://hl7.org/fhir">
  <id value="specimen2FHIR-lab-myhealtheu"/>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p>Mapping from <a href="StructureDefinition-SpecimenLab.html">Specimen information</a> to <a href="StructureDefinition-Specimen-lab-myhealtheu.html">Specimen: Laboratory</a></p><p>DRAFT (not intended for production usage). Published on 2024-04-18 20:56:17+0200 by MyHealth@Eu (MyHealth@Eu: <a href="https://health.ec.europa.eu/other-pages/basic-page/myhealtheu-flyer-addressed-patients-and-health-professionals_en">https://health.ec.europa.eu/ot...</a>). </p><div><p>MyHealth@EUSpecimen Model to this guide Map</p>
</div><br/><p><b>Group 1</b> Mapping from <a href="StructureDefinition-SpecimenLab.html">Specimen information</a> to <a href="StructureDefinition-Specimen-lab-myhealtheu.html">Specimen: Laboratory</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SpecimenLab.identifier (Specimen identifier)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.identifier</td><td/></tr><tr><td>SpecimenLab.speciesType (Type of species)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.subject.extension:patient-animal.extension:species</td><td>subject.ofType(Patient)</td></tr><tr><td>SpecimenLab.material (Material)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.type</td><td/></tr><tr><td>SpecimenLab.collected (Collection period)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.collection.collected[x]</td><td/></tr><tr><td>SpecimenLab.anatomicLocation (Anatomic location)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.bodySite</td><td/></tr><tr><td>SpecimenLab.anatomicLocation (Anatomic location)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.anatomicLocation.location (Body location)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.bodySite</td><td/></tr><tr><td>SpecimenLab.anatomicLocation.location (Body location)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.anatomicLocation.laterality (Laterality)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.anatomicLocation.qualifier (Specimen site qualifier)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.morphology (Morphology)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.sourceDevice (Source Device)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Specimen.subject</td><td>When the device (e.g. the catheter) is what has been examinated. In this case the subject is of type Device
If the device is meant instead as the mean used to collect the specimen (e.g blood collected from the catheter), then, this is represented by the collectionMethod attribute and mapped into the Specimen.collection.method</td></tr><tr><td>SpecimenLab.sourceDevice.type (Type of device)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.subject.type</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.name (Device Name)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.subject.manufacturer</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.modelName (Model Name)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.subject.deviceName.name</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.identifier (Device Identifier)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.subject.udiCarrier</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.identifier (Device Identifier)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.subject.identifier</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.manufacturer (Manufacturer)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.subject.manufacturer</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.collectionMethod (Collection procedure/method)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.collection.method</td><td/></tr><tr><td>SpecimenLab.receivedDateTime (Received date)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.receivedTime</td><td/></tr></table><hr/><p><b>Group 2</b> Mapping from <a href="StructureDefinition-SpecimenLab.html">Specimen information</a> to <code>BodyStructureMyHealthEu</code></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SpecimenLab.anatomicLocation (Anatomic location)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>BodyStructure.</td></tr><tr><td>SpecimenLab.anatomicLocation.location (Body location)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>BodyStructure.location</td></tr><tr><td>SpecimenLab.anatomicLocation.laterality (Laterality)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>BodyStructure.extension:laterality</td></tr><tr><td>SpecimenLab.anatomicLocation.qualifier (Specimen site qualifier)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>BodyStructure.locationQualifier</td></tr><tr><td>SpecimenLab.morphology (Morphology)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>BodyStructure.morphology</td></tr></table></div>
  </text>
  <url
       value="http://fhir.ehdsi.eu/laboratory/ConceptMap/specimen2FHIR-lab-myhealtheu"/>
  <version value="0.0.1"/>
  <name value="Specimen2Fhir"/>
  <title value="MyHealth@EUSpecimen to this guide Map"/>
  <status value="draft"/>
  <experimental value="true"/>
  <date value="2024-04-18T20:56:17+02:00"/>
  <publisher value="MyHealth@Eu"/>
  <contact>
    <name value="MyHealth@Eu"/>
    <telecom>
      <system value="url"/>
      <value
             value="https://health.ec.europa.eu/other-pages/basic-page/myhealtheu-flyer-addressed-patients-and-health-professionals_en"/>
    </telecom>
  </contact>
  <description value="MyHealth@EUSpecimen Model to this guide Map"/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="150"/>
      <display value="Europe"/>
    </coding>
  </jurisdiction>
  <purpose
           value="It shows how the Specimen data set defined by the EU MyHealth@EUguidelines is mapped into this guide"/>
  <sourceUri
             value="http://fhir.ehdsi.eu/laboratory/StructureDefinition/SpecimenLab"/>
  <targetUri
             value="http://fhir.ehdsi.eu/laboratory/StructureDefinition/Specimen-lab-myhealtheu"/>
  <group>
    <source
            value="http://fhir.ehdsi.eu/laboratory/StructureDefinition/SpecimenLab"/>
    <target
            value="http://fhir.ehdsi.eu/laboratory/StructureDefinition/Specimen-lab-myhealtheu"/>
    <element>
      <code value="SpecimenLab.identifier"/>
      <display value="Specimen identifier"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.identifier"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.speciesType"/>
      <display value="Type of species"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code
              value="Specimen.subject.extension:patient-animal.extension:species"/>
        <equivalence value="relatedto"/>
        <comment value="subject.ofType(Patient)"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.material"/>
      <display value="Material"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.type"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.collected"/>
      <display value="Collection period"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.collection.collected[x]"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation"/>
      <display value="Anatomic location"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.bodySite"/>
        <equivalence value="relatedto"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation"/>
      <display value="Anatomic location"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.extension:bodySite"/>
        <equivalence value="relatedto"/>
        <comment value="see Group 2 for details"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.location"/>
      <display value="Body location"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.bodySite"/>
        <equivalence value="relatedto"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.location"/>
      <display value="Body location"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.extension:bodySite"/>
        <equivalence value="relatedto"/>
        <comment value="see Group 2 for details"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.laterality"/>
      <display value="Laterality"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.extension:bodySite"/>
        <equivalence value="relatedto"/>
        <comment value="see Group 2 for details"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.qualifier"/>
      <display value="Specimen site qualifier"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.extension:bodySite"/>
        <equivalence value="relatedto"/>
        <comment value="see Group 2 for details"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.morphology"/>
      <display value="Morphology"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.collection.extension:bodySite"/>
        <equivalence value="relatedto"/>
        <comment value="see Group 2 for details"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice"/>
      <display value="Source Device"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="Specimen.subject"/>
        <equivalence value="relatedto"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated. In this case the subject is of type Device
If the device is meant instead as the mean used to collect the specimen (e.g blood collected from the catheter), then, this is represented by the collectionMethod attribute and mapped into the Specimen.collection.method"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice.type"/>
      <display value="Type of device"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.subject.type"/>
        <equivalence value="equivalent"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated."/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice.name"/>
      <display value="Device Name"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.subject.manufacturer"/>
        <equivalence value="equivalent"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated."/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice.modelName"/>
      <display value="Model Name"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.subject.deviceName.name"/>
        <equivalence value="equivalent"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated."/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice.identifier"/>
      <display value="Device Identifier"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.subject.udiCarrier"/>
        <equivalence value="equivalent"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated."/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice.identifier"/>
      <display value="Device Identifier"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.subject.identifier"/>
        <equivalence value="equivalent"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated."/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.sourceDevice.manufacturer"/>
      <display value="Manufacturer"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.subject.manufacturer"/>
        <equivalence value="equivalent"/>
        <comment
                 value="When the device (e.g. the catheter) is what has been examinated."/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.collectionMethod"/>
      <display value="Collection procedure/method"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.collection.method"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.receivedDateTime"/>
      <display value="Received date"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="Specimen.receivedTime"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
  </group>
  <group>
    <source
            value="http://fhir.ehdsi.eu/laboratory/StructureDefinition/SpecimenLab"/>
    <target value="BodyStructureMyHealthEu"/>
    <element>
      <code value="SpecimenLab.anatomicLocation"/>
      <display value="Anatomic location"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="relatedto"/>
        </modifierExtension>
        <code value="BodyStructure."/>
        <equivalence value="relatedto"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.location"/>
      <display value="Body location"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="BodyStructure.location"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.laterality"/>
      <display value="Laterality"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="BodyStructure.extension:laterality"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.anatomicLocation.qualifier"/>
      <display value="Specimen site qualifier"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="BodyStructure.locationQualifier"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="SpecimenLab.morphology"/>
      <display value="Morphology"/>
      <target>
        <modifierExtension
                           url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
          <valueCode value="equivalent"/>
        </modifierExtension>
        <code value="BodyStructure.morphology"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
  </group>
</ConceptMap>