MyHealth@Eu Laboratory Report
0.1.1 - trial-use 150

MyHealth@Eu Laboratory Report - Local Development build (v0.1.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: eHDSI Microorganism - JSON Representation

Page standards status: Trial-use Maturity Level: 2

Raw json | Download

{
  "resourceType" : "ValueSet",
  "id" : "eHDSIMicroorganism",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet eHDSIMicroorganism</b></p><a name=\"eHDSIMicroorganism\"> </a><a name=\"hceHDSIMicroorganism\"> </a><a name=\"eHDSIMicroorganism-en-US\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 409822003 (Domain Bacteria (organism))</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 441649000 (Class Cestoda and/or class Trematoda and/or phylum Nematoda)</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 414561005 (Kingdom Fungi (organism))</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 84676004 (Prion)</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 49872002 (Virus)</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 417396000 (Kingdom Protozoa (organism))</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 419036000 (Superkingdom Archaea)</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 426785004 (Kingdom Chromista (organism))</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 370570004 (Kingdom Protista)</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 417377004 (Kingdom Viridiplantae (organism))</li><li>Include codes from<a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a> where concept  descends from 243565002 (Slime mold)</li><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://snomed.info/id/37096001\">37096001</a></td><td>Dermatobia hominis</td></tr><tr><td><a href=\"http://snomed.info/id/91505006\">91505006</a></td><td>Genus Glossina</td></tr><tr><td><a href=\"http://snomed.info/id/32768009\">32768009</a></td><td>Prototheca zopfii</td></tr><tr><td><a href=\"http://snomed.info/id/76404002\">76404002</a></td><td>Culex</td></tr><tr><td><a href=\"http://snomed.info/id/45776000\">45776000</a></td><td>Pthirus pubis</td></tr><tr><td><a href=\"http://snomed.info/id/37563009\">37563009</a></td><td>Prototheca</td></tr><tr><td><a href=\"http://snomed.info/id/260148009\">260148009</a></td><td>Dermatophagoides microceras</td></tr><tr><td><a href=\"http://snomed.info/id/54190007\">54190007</a></td><td>Anopheles</td></tr><tr><td><a href=\"http://snomed.info/id/44689009\">44689009</a></td><td>Lucilia</td></tr><tr><td><a href=\"http://snomed.info/id/38152001\">38152001</a></td><td>Phlebotomus</td></tr><tr><td><a href=\"http://snomed.info/id/67333007\">67333007</a></td><td>Sarcoptes scabiei</td></tr><tr><td><a href=\"http://snomed.info/id/30991000087103\">30991000087103</a></td><td>Normal oropharyngeal microbiota</td></tr><tr><td><a href=\"http://snomed.info/id/57637003\">57637003</a></td><td>Aedes</td></tr><tr><td><a href=\"http://snomed.info/id/50721004\">50721004</a></td><td>Calliphora</td></tr><tr><td><a href=\"http://snomed.info/id/49295000\">49295000</a></td><td>Genus Dermatobia</td></tr><tr><td><a href=\"http://snomed.info/id/70523003\">70523003</a></td><td>Prototheca wickerhamii</td></tr><tr><td><a href=\"http://snomed.info/id/703010001\">703010001</a></td><td>Escherichia coli or Hafnia alvei</td></tr><tr><td><a href=\"http://snomed.info/id/84936006\">84936006</a></td><td>Pediculus humanus</td></tr><tr><td><a href=\"http://snomed.info/id/106838006\">106838006</a></td><td>Family Dermanyssidae</td></tr><tr><td><a href=\"http://snomed.info/id/25532001\">25532001</a></td><td>Trombicula</td></tr><tr><td><a href=\"http://snomed.info/id/421280006\">421280006</a></td><td>Subfamily Cuterebrinae</td></tr><tr><td><a href=\"http://snomed.info/id/67052007\">67052007</a></td><td>Cimex lectularius</td></tr><tr><td><a href=\"http://snomed.info/id/25873009\">25873009</a></td><td>Demodex</td></tr><tr><td><a href=\"http://snomed.info/id/32220002\">32220002</a></td><td>Tunga penetrans</td></tr><tr><td><a href=\"http://snomed.info/id/49592001\">49592001</a></td><td>Harvest mite</td></tr><tr><td><a href=\"http://snomed.info/id/89126000\">89126000</a></td><td>Ixodes ricinus</td></tr><tr><td><a href=\"http://snomed.info/id/30981000087100\">30981000087100</a></td><td>Normal intestinal microbiota</td></tr><tr><td><a href=\"http://snomed.info/id/106801006\">106801006</a></td><td>Family Sarcophagidae</td></tr><tr><td><a href=\"http://snomed.info/id/71241004\">71241004</a></td><td>Genus Phthirus</td></tr><tr><td><a href=\"http://snomed.info/id/14280005\">14280005</a></td><td>Genus Simulium</td></tr><tr><td><a href=\"http://snomed.info/id/65009006\">65009006</a></td><td>Argas reflexus</td></tr><tr><td><a href=\"http://snomed.info/id/23506009\">23506009</a></td><td>Normal flora</td></tr><tr><td><a href=\"http://snomed.info/id/264401009\">264401009</a></td><td>Dermatophagoides pteronyssimus</td></tr><tr><td><a href=\"http://snomed.info/id/15122003\">15122003</a></td><td>Algae</td></tr><tr><td><a href=\"http://snomed.info/id/112476003\">112476003</a></td><td>Dermatophagoides farinae</td></tr><tr><td><a href=\"http://snomed.info/id/17845007\">17845007</a></td><td>Ctenocephalides</td></tr><tr><td><a href=\"http://snomed.info/id/106799008\">106799008</a></td><td>Family Calliphoridae</td></tr><tr><td><a href=\"http://snomed.info/id/47820000\">47820000</a></td><td>Pulex irritans</td></tr></table></li></ul></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger" : 2
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode" : "trial-use"
    }
  ],
  "url" : "http://terminology.ehdsi.eu/ValueSet/eHDSIMicroorganism",
  "identifier" : [
    {
      "system" : "urn:ietf:rfc:3986",
      "value" : "urn:oid:1.3.6.1.4.1.12559.11.10.1.3.1.42.78"
    }
  ],
  "version" : "0.1.1",
  "name" : "EHDSIMicroorganism",
  "title" : "eHDSI Microorganism",
  "status" : "active",
  "experimental" : false,
  "date" : "2025-05-14T15:15:23+00:00",
  "publisher" : "MyHealth@Eu",
  "contact" : [
    {
      "name" : "MyHealth@Eu",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://health.ec.europa.eu/other-pages/basic-page/myhealtheu-flyer-addressed-patients-and-health-professionals_en"
        }
      ]
    }
  ],
  "description" : "eHDSI Morphologic Abnormality",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "150",
          "display" : "Europe"
        }
      ]
    }
  ],
  "copyright" : "The Value Set incorporates SNOMED CT®, used by permission of the International Health Terminology Standards Development Organisation, trading as SNOMED International. SNOMED CT was originally created by the College of American Pathologists. SNOMED CT is a registered trademark of the International Health Terminology Standards Development Organisation, all rights reserved. For further information on the use of SNOMED CT, including translations, implementers of MyHealth@EU should review usage terms or directly contact SNOMED International: info@snomed.org.",
  "compose" : {
    "include" : [
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "409822003"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "441649000"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "414561005"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "84676004"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "49872002"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "417396000"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "419036000"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "426785004"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "370570004"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "417377004"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "filter" : [
          {
            "property" : "concept",
            "op" : "descendent-of",
            "value" : "243565002"
          }
        ]
      },
      {
        "system" : "http://snomed.info/sct",
        "concept" : [
          {
            "code" : "37096001",
            "display" : "Dermatobia hominis"
          },
          {
            "code" : "91505006",
            "display" : "Genus Glossina"
          },
          {
            "code" : "32768009",
            "display" : "Prototheca zopfii"
          },
          {
            "code" : "76404002",
            "display" : "Culex"
          },
          {
            "code" : "45776000",
            "display" : "Pthirus pubis"
          },
          {
            "code" : "37563009",
            "display" : "Prototheca"
          },
          {
            "code" : "260148009",
            "display" : "Dermatophagoides microceras"
          },
          {
            "code" : "54190007",
            "display" : "Anopheles"
          },
          {
            "code" : "44689009",
            "display" : "Lucilia"
          },
          {
            "code" : "38152001",
            "display" : "Phlebotomus"
          },
          {
            "code" : "67333007",
            "display" : "Sarcoptes scabiei"
          },
          {
            "code" : "30991000087103",
            "display" : "Normal oropharyngeal microbiota"
          },
          {
            "code" : "57637003",
            "display" : "Aedes"
          },
          {
            "code" : "50721004",
            "display" : "Calliphora"
          },
          {
            "code" : "49295000",
            "display" : "Genus Dermatobia"
          },
          {
            "code" : "70523003",
            "display" : "Prototheca wickerhamii"
          },
          {
            "code" : "703010001",
            "display" : "Escherichia coli or Hafnia alvei"
          },
          {
            "code" : "84936006",
            "display" : "Pediculus humanus"
          },
          {
            "code" : "106838006",
            "display" : "Family Dermanyssidae"
          },
          {
            "code" : "25532001",
            "display" : "Trombicula"
          },
          {
            "code" : "421280006",
            "display" : "Subfamily Cuterebrinae"
          },
          {
            "code" : "67052007",
            "display" : "Cimex lectularius"
          },
          {
            "code" : "25873009",
            "display" : "Demodex"
          },
          {
            "code" : "32220002",
            "display" : "Tunga penetrans"
          },
          {
            "code" : "49592001",
            "display" : "Harvest mite"
          },
          {
            "code" : "89126000",
            "display" : "Ixodes ricinus"
          },
          {
            "code" : "30981000087100",
            "display" : "Normal intestinal microbiota"
          },
          {
            "code" : "106801006",
            "display" : "Family Sarcophagidae"
          },
          {
            "code" : "71241004",
            "display" : "Genus Phthirus"
          },
          {
            "code" : "14280005",
            "display" : "Genus Simulium"
          },
          {
            "code" : "65009006",
            "display" : "Argas reflexus"
          },
          {
            "code" : "23506009",
            "display" : "Normal flora"
          },
          {
            "code" : "264401009",
            "display" : "Dermatophagoides pteronyssimus"
          },
          {
            "code" : "15122003",
            "display" : "Algae"
          },
          {
            "code" : "112476003",
            "display" : "Dermatophagoides farinae"
          },
          {
            "code" : "17845007",
            "display" : "Ctenocephalides"
          },
          {
            "code" : "106799008",
            "display" : "Family Calliphoridae"
          },
          {
            "code" : "47820000",
            "display" : "Pulex irritans"
          }
        ]
      }
    ]
  }
}